Bad Coop repeating himself reminded me of the last bit of the season 2 finale, Cooper repeats "I need to brush my teeth" twice in a awkward way to Truman and Dr. Hayward before going into the bathroom for the final BOB in the mirror reveal. I think that whatever Bad Cooper is, he can't mimic human behavior very well when exhausted, or maybe it's just that he doesn't know how to act towards people that knew the real Cooper.
In regards to the Coopers, I think it might be as you say and thus MIKE saying one of them needs to die is just him wanting Bad Coop punished for tricking the "system" (whatever that might be), alternatively perhaps both of them are weakened by co-existing in the same "reality", which could explain the strange behavior from both of them so far, or be a driving force further on in the series.